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Harris KE, Schnittke N, Beckendorf SK.  2007.  Two ligands signal through the Drosophila PDGF/VEGF receptor to ensure proper salivary gland positioning.. Mechanisms of development. 124(6):441-8. Abstract
Baylies MK, Bate M.  1996.  twist: a myogenic switch in Drosophila.. Science (New York, N.Y.). 272(5267):1481-4. Abstract
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Chamoun Z, Mann RK, Nellen D, von Kessler DP, Bellotto M, Beachy PA, Basler K.  2001.  Skinny hedgehog, an acyltransferase required for palmitoylation and activity of the hedgehog signal.. Science (New York, N.Y.). 293(5537):2080-4. Abstract
Ligoxygakis P, Pelte N, Ji C, Leclerc V, Duvic B, Belvin M, Jiang H, Hoffmann JA, Reichhart J-M.  2002.  A serpin mutant links Toll activation to melanization in the host defence of Drosophila.. The EMBO journal. 21(23):6330-7. Abstract
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Harrison JC, Bardes ES, Ohya Y, Lew DJ.  2001.  A role for the Pkc1p/Mpk1p kinase cascade in the morphogenesis checkpoint.. Nature cell biology. 3(4):417-20. Abstract
Eldar A, Dorfman R, Weiss D, Ashe H, Shilo B-Z, Barkai N.  2002.  Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.. Nature. 419(6904):304-8. Abstract
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Chaouiya C, Remy E, Mossé B, Thieffry D.  2003.  Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework. Positive Systems. 294:830-832.
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Béal J, Pantolini L, Noël V, Barillot E, Calzone L.  2021.  Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers. PLoS Comput. Biol..
Sims D, Duchek P, Baum B.  2009.  PDGF/VEGF signaling controls cell size in Drosophila.. Genome biology. 10(2):R20. Abstract
Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N.  2004.  The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract
Montagud A, Béal J, Tobalina L, Traynard P, Subramanian V, Szalai B, Alföldi R, Puskás L, Valencia A, Barillot E et al..  Submitted.  Patient-specific Boolean models of signaling networks guide personalized treatments.
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Tapanes-Castillo A, Baylies MK.  2004.  Notch signaling patterns Drosophila mesodermal segments by regulating the bHLH transcription factor twist.. Development (Cambridge, England). 131(10):2359-72. Abstract
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Bate M, Rushton E.  1993.  Myogenesis and muscle patterning in Drosophila.. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 316(9):1047-61. Abstract
Mombach J, Bugs C, Chaouiya C.  2014.  Modelling the onset of senescence at the G1/S cell cycle checkpoint. BMC Genomics. 15:S7.
Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al..  2009.  Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract
Coolen M, Thieffry D, Drivenes Ø, Becker TS, Bally-Cuif L.  2012.  miR-9 controls the timing of neurogenesis through the direct inhibition of antagonistic factors.. Developmental cell. 22(5):1052-64. Abstract
Cohen DPA, Martignetti L, Robine S, Barillot E, Zinovyev A, Calzone L.  2015.  Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.. PLoS computational biology. 11(11):e1004571. Abstract
Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A.  2010.  Mathematical modelling of cell-fate decision in response to death receptor engagement.. PLoS computational biology. 6(3):e1000702. Abstract
Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A.  2010.  Mathematical modelling of cell-fate decision in response to death receptor engagement. PLoS computational biology. 6(3):e1000702. Abstract
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Mbodj A, Junion G, Brun C, Furlong EEM, Thieffry D.  2013.  Logical modelling of Drosophila signalling pathways.. Molecular bioSystems. 9(9):2248-58. Abstract
Saez-Rodriguez J, Simeoni L, Lindquist JA, Hemenway R, Bommhardt U, Arndt B, Haus U-U, Weismantel R, Gilles ED, Klamt S et al..  2007.  A logical model provides insights into T cell receptor signaling.. PLoS computational biology. 3(8):e163. Abstract
Kouhara H, Hadari YR, Spivak-Kroizman T, Schilling J, Bar-Sagi D, Lax I, Schlessinger J.  1997.  A lipid-anchored Grb2-binding protein that links FGF-receptor activation to the Ras/MAPK signaling pathway.. Cell. 89(5):693-702. Abstract
Yokouchi M, Kondo T, Houghton A, Bartkiewicz M, Horne WC, Zhang H, Yoshimura A, Baron R.  1999.  Ligand-induced ubiquitination of the epidermal growth factor receptor involves the interaction of the c-Cbl RING finger and UbcH7.. The Journal of biological chemistry. 274(44):31707-12. Abstract
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Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D.  2013.  Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract
Baena-Lopez LA, Nojima H, Vincent J-P.  2012.  Integration of morphogen signalling within the growth regulatory network.. Current opinion in cell biology. 24(2):166-72. Abstract


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