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A

Ligoxygakis P, Pelte N, Hoffmann JA, Reichhart J-M. 2002. Activation of Drosophila Toll during fungal infection by a blood serine protease.. Science (New York, N.Y.). 297(5578):114-6. Abstract

Lee JJ, Ekker SC, von Kessler DP, Porter JA, Sun BI, Beachy PA. 1994. Autoproteolysis in hedgehog protein biogenesis.. Science (New York, N.Y.). 266(5190):1528-37. Abstract

B

Brooks A, Dou W, Yang X, Brosnan T, Pargett M, Raftery LA, Umulis DM. 2012. BMP signaling in wing development: A critical perspective on quantitative image analysis.. FEBS letters. 586(14):1942-52. Abstract

C

Porter JA, Young KE, Beachy PA. 1996. Cholesterol modification of hedgehog signaling proteins in animal development.. Science (New York, N.Y.). 274(5285):255-9. Abstract

D

Pai LM, Barcelo G, Schüpbach T. 2000. D-cbl, a negative regulator of the Egfr pathway, is required for dorsoventral patterning in Drosophila oogenesis.. Cell. 103(1):51-61. Abstract

Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G. 2020. Dynamical Boolean Modeling of Immunogenic Cell Death.

Sánchez-Villanueva J, N’Guyen L, Poplineau M, Duprez E, Remy É, Thieffry D. 2024. Dynamical modelling of the regulatory network underlying Retinoic Acid resistance in Acute Promyelocytic Leukaemia. European Conference in Computational Biology.

G

Ptachne M. 1992. Genetic Switch. Phage Lambda and Higher Organisms (second ed.).

H

Selvaggio G, Canato S, Pawar A, Monteiro PT, Janody F, Chaouiya C. 2020. Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research.

I

Pepinsky RB, Zeng C, Wen D, Rayhorn P, Baker DP, Williams KP, Bixler SA, Ambrose CM, Garber EA, Miatkowski K et al.. 1998. Identification of a palmitic acid-modified form of human Sonic hedgehog.. The Journal of biological chemistry. 273(22):14037-45. Abstract

Pelte N, Robertson AS, Zou Z, Belorgey D, Dafforn TR, Jiang H, Lomas D, Reichhart J-M, Gubb D. 2006. Immune challenge induces N-terminal cleavage of the Drosophila serpin Necrotic.. Insect biochemistry and molecular biology. 36(1):37-46. Abstract

J

Hou XS, Perrimon N. 1997. The JAK-STAT pathway in Drosophila.. Trends in genetics : TIG. 13(3):105-10. Abstract

M

Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al.. 2009. Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract

Enciso J, Mayani H, Mendoza L, Pelayo R. 2016. Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoietic-mesenchymal communication networks. Frontiers in Physiology. 7

Enciso J, Mayani H, Mendoza L, Pelayo R. Submitted. Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoieticmesenchymal communication networks..

P

Montagud A, Béal J, Tobalina L, Traynard P, Subramanian V, Szalai B, Alföldi R, Puskás L, Valencia A, Barillot E et al.. Submitted. Patient-specific Boolean models of signaling networks guide personalized treatments.

Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N. 2004. The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract

Béal J, Pantolini L, Noël V, Barillot E, Calzone L. 2021. Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers. PLoS Comput. Biol..

Q

Mbodj A, Gustafson HE, Ciglar L, Junion G, GONZALEZ A, GIRARDOT C, PERRIN L, Furlong EEM, Thieffry D. 2016. Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. PLoS Comput Biol. 12:1-17. Abstract

R

Micchelli CA, The I, Selva E, Mogila V, Perrimon N. 2002. Rasp, a putative transmembrane acyltransferase, is required for Hedgehog signaling.. Development (Cambridge, England). 129(4):843-51. Abstract

Tauc HM, Mann T, Werner K, Pandur P. 2012. A role for Drosophila Wnt-4 in heart development.. Genesis (New York, N.Y. : 2000). 50(6):466-81. Abstract

S

Ligoxygakis P, Pelte N, Ji C, Leclerc V, Duvic B, Belvin M, Jiang H, Hoffmann JA, Reichhart J-M. 2002. A serpin mutant links Toll activation to melanization in the host defence of Drosophila.. The EMBO journal. 21(23):6330-7. Abstract

Perrimon N, Pitsouli C, Shilo B-Z. 2012. Signaling mechanisms controlling cell fate and embryonic patterning.. Cold Spring Harbor perspectives in biology. 4(8):a005975. Abstract