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Biblio

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1992
Ptachne M.  1992.  Genetic Switch. Phage Lambda and Higher Organisms (second ed.).
1994
Lee JJ, Ekker SC, von Kessler DP, Porter JA, Sun BI, Beachy PA.  1994.  Autoproteolysis in hedgehog protein biogenesis.. Science (New York, N.Y.). 266(5190):1528-37. Abstract
1996
Porter JA, Young KE, Beachy PA.  1996.  Cholesterol modification of hedgehog signaling proteins in animal development.. Science (New York, N.Y.). 274(5285):255-9. Abstract
1997
Hou XS, Perrimon N.  1997.  The JAK-STAT pathway in Drosophila.. Trends in genetics : TIG. 13(3):105-10. Abstract
1998
Pepinsky RB, Zeng C, Wen D, Rayhorn P, Baker DP, Williams KP, Bixler SA, Ambrose CM, Garber EA, Miatkowski K et al..  1998.  Identification of a palmitic acid-modified form of human Sonic hedgehog.. The Journal of biological chemistry. 273(22):14037-45. Abstract
2000
Pai LM, Barcelo G, Schüpbach T.  2000.  D-cbl, a negative regulator of the Egfr pathway, is required for dorsoventral patterning in Drosophila oogenesis.. Cell. 103(1):51-61. Abstract
2002
Ligoxygakis P, Pelte N, Ji C, Leclerc V, Duvic B, Belvin M, Jiang H, Hoffmann JA, Reichhart J-M.  2002.  A serpin mutant links Toll activation to melanization in the host defence of Drosophila.. The EMBO journal. 21(23):6330-7. Abstract
Micchelli CA, The I, Selva E, Mogila V, Perrimon N.  2002.  Rasp, a putative transmembrane acyltransferase, is required for Hedgehog signaling.. Development (Cambridge, England). 129(4):843-51. Abstract
Ligoxygakis P, Pelte N, Hoffmann JA, Reichhart J-M.  2002.  Activation of Drosophila Toll during fungal infection by a blood serine protease.. Science (New York, N.Y.). 297(5578):114-6. Abstract
2004
Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N.  2004.  The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract
2006
Pelte N, Robertson AS, Zou Z, Belorgey D, Dafforn TR, Jiang H, Lomas D, Reichhart J-M, Gubb D.  2006.  Immune challenge induces N-terminal cleavage of the Drosophila serpin Necrotic.. Insect biochemistry and molecular biology. 36(1):37-46. Abstract
2009
Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al..  2009.  Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract
2012
Perrimon N, Pitsouli C, Shilo B-Z.  2012.  Signaling mechanisms controlling cell fate and embryonic patterning.. Cold Spring Harbor perspectives in biology. 4(8):a005975. Abstract
Brooks A, Dou W, Yang X, Brosnan T, Pargett M, Raftery LA, Umulis DM.  2012.  BMP signaling in wing development: A critical perspective on quantitative image analysis.. FEBS letters. 586(14):1942-52. Abstract
Tauc HM, Mann T, Werner K, Pandur P.  2012.  A role for Drosophila Wnt-4 in heart development.. Genesis (New York, N.Y. : 2000). 50(6):466-81. Abstract
2016
Enciso J, Mayani H, Mendoza L, Pelayo R.  2016.  Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoietic-mesenchymal communication networks. Frontiers in Physiology. 7
Mbodj A, Gustafson HE, Ciglar L, Junion G, GONZALEZ A, GIRARDOT C, PERRIN L, Furlong EEM, Thieffry D.  2016.  Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. PLoS Comput Biol. 12:1-17. Abstract
2020
Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G.  2020.  Dynamical Boolean Modeling of Immunogenic Cell Death.
Selvaggio G, Canato S, Pawar A, Monteiro PT, Janody F, Chaouiya C.  2020.  Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research.
2021
Béal J, Pantolini L, Noël V, Barillot E, Calzone L.  2021.  Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers. PLoS Comput. Biol..
2024
Sánchez-Villanueva J, N’Guyen L, Poplineau M, Duprez E, Remy É, Thieffry D.  2024.  Dynamical modelling of the regulatory network underlying Retinoic Acid resistance in Acute Promyelocytic Leukaemia. European Conference in Computational Biology.
Submitted
Enciso J, Mayani H, Mendoza L, Pelayo R.  Submitted.  Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoieticmesenchymal communication networks..
Montagud A, Béal J, Tobalina L, Traynard P, Subramanian V, Szalai B, Alföldi R, Puskás L, Valencia A, Barillot E et al..  Submitted.  Patient-specific Boolean models of signaling networks guide personalized treatments.


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