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Journal Article
Ligoxygakis P, Pelte N, Hoffmann JA, Reichhart J-M.  2002.  Activation of Drosophila Toll during fungal infection by a blood serine protease.. Science (New York, N.Y.). 297(5578):114-6. Abstract
O'Neill EM, Rebay I, Tjian R, Rubin GM.  1994.  The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway.. Cell. 78(1):137-47. Abstract
Weber ANR, Tauszig-Delamasure S, Hoffmann JA, Lelièvre E, Gascan H, Ray KP, Morse MA, Imler J-L, Gay NJ.  2003.  Binding of the Drosophila cytokine Spätzle to Toll is direct and establishes signaling.. Nature immunology. 4(8):794-800. Abstract
Brooks A, Dou W, Yang X, Brosnan T, Pargett M, Raftery LA, Umulis DM.  2012.  BMP signaling in wing development: A critical perspective on quantitative image analysis.. FEBS letters. 586(14):1942-52. Abstract
Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse A-M, Garin J, Malissen B, Daëron M, Thieffry D.  2014.  Computational modeling of the main signaling pathways involved in mast cell activation. Current topics in microbiology and immunology. 382:69-93. Abstract
Sanchez-Villanueva JA, Rodriguez-Jorge O, Ramirez-Pliego O, Rosas-Salgado G, Abou-Jaoudé W, Hernandez C, Naldi A, Thieffry D, Santana MA.  2019.  Contribution of ROS and metabolic status to neonatal and adult CD8+ T cell activation. PLoS One.
Rodríguez-Jorge O, Kempis-Calanis LA, Abou-Jaoudé W, Gutiérrez-Reyna DY, Hernandez C, Ramirez-Pliego O, Thomas-Chollier M, Spicuglia S, Santana MA, Thieffry D.  2019.  Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation.. Science Signaling.
Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A.  2015.  Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.. PLoS computational biology. 11(8):e1004426. Abstract
Royet J.  2004.  Drosophila melanogaster innate immunity: an emerging role for peptidoglycan recognition proteins in bacteria detection.. Cellular and molecular life sciences : CMLS. 61(5):537-46. Abstract
Valanne S, Wang J-H, Rämet M.  2011.  The Drosophila Toll signaling pathway.. Journal of immunology (Baltimore, Md. : 1950). 186(2):649-56. Abstract
Gobert V, Gottar M, Matskevich AA, Rutschmann S, Royet J, Belvin M, Hoffmann JA, Ferrandon D.  2003.  Dual activation of the Drosophila toll pathway by two pattern recognition receptors.. Science (New York, N.Y.). 302(5653):2126-30. Abstract
Naldi A, Remy E, Thieffry D, Chaouiya C.  2011.  Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412(21):2207-2218.
Bischoff V, Vignal C, Boneca IG, Michel T, Hoffmann JA, Royet J.  2004.  Function of the drosophila pattern-recognition receptor PGRP-SD in the detection of Gram-positive bacteria.. Nature immunology. 5(11):1175-80. Abstract
Duchek P, Somogyi K, Jékely G, Beccari S, Rørth P.  2001.  Guidance of cell migration by the Drosophila PDGF/VEGF receptor.. Cell. 107(1):17-26. Abstract
Pepinsky RB, Zeng C, Wen D, Rayhorn P, Baker DP, Williams KP, Bixler SA, Ambrose CM, Garber EA, Miatkowski K et al..  1998.  Identification of a palmitic acid-modified form of human Sonic hedgehog.. The Journal of biological chemistry. 273(22):14037-45. Abstract
Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M, Beachy PA.  2003.  Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells.. Science (New York, N.Y.). 299(5615):2039-45. Abstract
Pelte N, Robertson AS, Zou Z, Belorgey D, Dafforn TR, Jiang H, Lomas D, Reichhart J-M, Gubb D.  2006.  Immune challenge induces N-terminal cleavage of the Drosophila serpin Necrotic.. Insect biochemistry and molecular biology. 36(1):37-46. Abstract
Desterke C, Martinaud C, Ruzehaji N, Le Bousse-Kerdilès M-C.  2015.  Inflammation as a Keystone of Bone Marrow Stroma Alterations in Primary Myelofibrosis.. Mediators of inflammation. 2015:415024. Abstract
Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D.  2013.  Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract
Cohen DPA, Martignetti L, Robine S, Barillot E, Zinovyev A, Calzone L.  2015.  Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.. PLoS computational biology. 11(11):e1004571. Abstract
Remy E, Rebouissou S, Chaouiya C, Zinovyev A, Radvanyi F, Calzone L.  2015.  A modelling approach to explain mutually exclusive and co-occurring genetic alterations in bladder tumorigenesis.. Cancer research. Abstract
Bate M, Rushton E.  1993.  Myogenesis and muscle patterning in Drosophila.. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 316(9):1047-61. Abstract
Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N.  2004.  The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract
Chaouiya C, REMY E, Thieffry D.  2008.  Petri net modelling of biological regulatory networks. Journal of Discrete Algorithms. 6(2):165-177.
Simão E, REMY E, Thieffry D, Chaouiya C.  2005.  Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.coli.. Bioinformatics (Oxford, England). 21 Suppl 2:ii190-6. Abstract


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