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G
Gobert V, Gottar M, Matskevich AA, Rutschmann S, Royet J, Belvin M, Hoffmann JA, Ferrandon D.  2003.  Dual activation of the Drosophila toll pathway by two pattern recognition receptors.. Science (New York, N.Y.). 302(5653):2126-30. Abstract
Gonzalez GA, Naldi A, Sánchez L, Thieffry D, Chaouiya C.  2006.  GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks.. Bio Systems. 84(2):91-100. Abstract
Gonzalez A, Chaouiya C, Thieffry D.  2006.  Dynamical Analysis of the Regulatory Network Defining the Dorsal-Ventral Boundary of the Drosophila Wing Imaginal Disc. Genetics. 174(3):1625-1634.
Gonzalez A, Chaouiya C, Thieffry D.  2008.  Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc. Bioinformatics. 24(16):i234-i240.
Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D.  2013.  Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract
H
Harris KE, Schnittke N, Beckendorf SK.  2007.  Two ligands signal through the Drosophila PDGF/VEGF receptor to ensure proper salivary gland positioning.. Mechanisms of development. 124(6):441-8. Abstract
Harrison JC, Bardes ES, Ohya Y, Lew DJ.  2001.  A role for the Pkc1p/Mpk1p kinase cascade in the morphogenesis checkpoint.. Nature cell biology. 3(4):417-20. Abstract
Hernadez C, Naldi A, Thomas-Chollier M, Thieffry D.  Submitted.  Computational verification of large logical models - application to the prediction of T cell response to checkpoint inhibitors.
Hou XS, Perrimon N.  1997.  The JAK-STAT pathway in Drosophila.. Trends in genetics : TIG. 13(3):105-10. Abstract
I
Ingham PW, McMahon AP.  2001.  Hedgehog signaling in animal development: paradigms and principles.. Genes & development. 15(23):3059-87.
Irons DJ.  2009.  Logical analysis of the budding yeast cell cycle. Journal of theoretical biology. 257(4):543-59. Abstract
Irvine KD, Vogt TF.  1997.  Dorsal—ventral signaling in limb development. Current Opinion in Cell Biology. 9(6):867-876.
J
Johnson AN, Mokalled MH, Haden TN, Olson EN.  2011.  JAK/Stat signaling regulates heart precursor diversification in Drosophila. Development. 138(21):4627-4638. Abstract
de Jong H.  2002.  Modeling and simulation of genetic regulatory systems: a literature review.. J Comput Biol. 9(1):67-103. Abstract
K
Kamiya Y, Miyazono K, Miyazawa K.  2008.  Specificity of the inhibitory effects of Dad on TGF-beta family type I receptors, Thickveins, Saxophone, and Baboon in Drosophila.. FEBS letters. 582(17):2496-500. Abstract
Kiger AA, Jones DL, Schulz C, Rogers MB, Fuller MT.  2001.  Stem cell self-renewal specified by JAK-STAT activation in response to a support cell cue.. Science (New York, N.Y.). 294(5551):2542-5. Abstract
Klamt S, Saez-Rodriguez J, Lindquist JA, Simeoni L, Gilles ED.  2006.  A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics. 7(1):56.
Klingensmith J, Nusse R.  1994.  Signaling by wingless in Drosophila.. Developmental biology. 166(2):396-414. Abstract
Klint P, Kanda S, Claesson-Welsh L.  1995.  Shc and a novel 89-kDa component couple to the Grb2-Sos complex in fibroblast growth factor-2-stimulated cells.. The Journal of biological chemistry. 270(40):23337-44. Abstract
Kondratova M, Barillot E, Zinovyev A, Calzone L.  2020.   Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response . Cancers. 12(12)
Kouhara H, Hadari YR, Spivak-Kroizman T, Schilling J, Bar-Sagi D, Lax I, Schlessinger J.  1997.  A lipid-anchored Grb2-binding protein that links FGF-receptor activation to the Ras/MAPK signaling pathway.. Cell. 89(5):693-702. Abstract
L
Lee JD, Treisman JE.  2001.  The role of Wingless signaling in establishing the anteroposterior and dorsoventral axes of the eye disc.. Development (Cambridge, England). 128(9):1519-29. Abstract
Lee JJ, Ekker SC, von Kessler DP, Porter JA, Sun BI, Beachy PA.  1994.  Autoproteolysis in hedgehog protein biogenesis.. Science (New York, N.Y.). 266(5190):1528-37. Abstract
Letort G, Montagud A, Stoll G, Heiland R, Calzone EBAZL, Macklin P.  2018.  PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. Bioinformatics. 35(7):1188–1196.
Levkowitz G, Waterman H, Ettenberg SA, Katz M, Tsygankov AY, Alroy I, Lavi S, Iwai K, Reiss Y, Ciechanover A et al..  1999.  Ubiquitin ligase activity and tyrosine phosphorylation underlie suppression of growth factor signaling by c-Cbl/Sli-1.. Molecular cell. 4(6):1029-40. Abstract


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