Logical Regulatory Graphs
Informally, a Logical Regulatory Graph (LRG) is a directed labelled multigraph representing interactions (the edges) between genes (the nodes). Each interaction involves two genes, the source and the target, becoming active whenever its source reaches a given level. The activation level of each gene g is defined by a regulatory function comprising parameters relative to all the source genes of all interactions targeting g.
For a more formal definition see Naldi 2011.
Build Regulatory Graphs
Transform Regulatory Graphs
Modifications of Regulatory Graphs that can be applied before running analysis
Analyse Regulatory Graphs
Like other, regulatory graphs can be saved in the or formats. They can also be exported to the . Additional specialised formats are listed below.