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Naldi A, Carneiro J, Chaouiya C, Thieffry D. 2010. Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Computational Biology. 6(9):e1000912.

Naldi A, Remy E, Thieffry D, Chaouiya C. 2011. Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412(21):2207-2218.

Naldi A, Thieffry D, Chaouiya C. 2007. Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. Computational Methods in Systems Biology. 4695:233-247.

Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse A-M, Garin J, Malissen B, Daëron M, Thieffry D. 2014. Computational modeling of the main signaling pathways involved in mast cell activation. Current topics in microbiology and immunology. 382:69-93. Abstract

Novák B, Tyson JJ. 2004. A model for restriction point control of the mammalian cell cycle. Journal of Theoretical Biology. 230(4):563-579.

Nuñez-Reza KJ, Naldi A, Sánchez-Jiménez A, Leon-Apodaca AV, Santana A, Thomas-Chollier M, Thieffry D, Medina-Rivera A. 2021. Logical modeling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.