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Companion Tools

EpiLog

EpiLog is a tool which makes use of LogicalModel to implement a cellular automata, defining a convenient framework for the qualitative modelling of epithelium pattern formation.
You can obtain more information at http://epilog-tool.org.

bioLQM

bioLQM is a tool for the manipulation of multi-valued logical models. It provides a set of core interfaces for the interoperability between different logical modelling tools (such as GINsim and EpiLog).
You can get it at https://github.com/colomoto/biolqm.

MDDlib

MDDlib is a simple toolkit written in Java for the manipulation of Multi-valued Decision Diagrams (MDD). GINsim uses MDDlib at his core, since all logical functions are represented as MDDs.
You can get it at https://github.com/colomoto/mddlib.

Basins of attraction

Using bioLQM in combination with BoolSim a set of Python scripts enable the computation of: attractors, basins of attraction and frontiers between attractors/basins of attraction.
You can get more information and get the code at http://ginsim.org/node/212.



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