References

Duncan Berenguier, Claudine Chaouiya, Pedro T. Monteiro, Aurélien Naldi, Elisabeth Remy, Denis Thieffry and Laurent Tichit (2013). Dynamical modeling and analysis of large cellular regulatory networks. Chaos: An Interdisciplinary Journal of Nonlinear Science. 23:025114. DOI: 10.1063/1.4809783

Claudine Chaouiya, Elisabeth Remy and Denis Thieffry (2006). Qualitative Petri Net Modelling of Genetic Networks. Lecture Notes in Computer Science. 4220:95-112. DOI: 10.1007/11880646_5

Claudine Chaouiya, Aurélien Naldi and Denis Thieffry (2012). Logical modelling of gene regulatory networks with GINsim. Methods Mol Biol.. 804:463-79. PM: 22144167

Nuno D. Mendes, F. Lang, Y.S. Le Cornec, R. Mateescu, Gregory Batt and Claudine Chaouiya (2013). Composition and abstraction of logical regulatory modules: application to multicellular systems. Bioinformatics. 29 (6):749-757. DOI: 10.1093/bioinformatics/btt033 PM: 23341501

Pedro T. Monteiro and Claudine Chaouiya (2012). Efficient verification for logical models of regulatory networks. Advances in Intelligent and Soft Computing (Proceedings of PACBB 2012). 154:259-267. DOI: 10.1007/978-3-642-28839-5_30

Aurélien Naldi, Denis Thieffry and Claudine Chaouiya (2007). Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. LNCS:LNBI. 4695/2007:233-247. DOI: 10.1007/978-3-540-75140-3_16

Aurélien Naldi, Duncan Berenguier, Adrien Fauré, Fabrice Lopez, Denis Thieffry and Claudine Chaouiya (2009). Logical modelling of regulatory networks with GINsim 2.3. BioSystems. 97(2):134-139. PM: 19426782

Aurélien Naldi, Elisabeth Remy, Denis Thieffry and Claudine Chaouiya (2011). Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412 (21):2207-2218. DOI: 10.1016/j.tcs.2010.10.021

Aurélien Naldi, Pedro T. Monteiro and Claudine Chaouiya (2012). Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control. Lecture Notes in Computer Science. Proceedings of CMSB 2012:288-306. DOI: 10.1007/978-3-642-33636-2_17

Elisabeth Remy and Paul Ruet (2008). From minimal signed circuits to the dynamics of Boolean regulatory networks. Bioinformatics. 24(16):i220-i226. DOI: 10.1093/bioinformatics/btn287

Denis Thieffry and René Thomas (1995). Dynamical behaviour of biological regulatory networks II. Immunity control in bacteriophage lambda.. Bull Math Biol. 57(2):277-97.

Denis Thieffry (2007). Dynamical roles of biological regulatory circuits. Briefings in Bioinformatics. 8(4):220-5. DOI: 10.1093/bib/bbm028