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Submitted
Sánchez-Osorio I, Hernández-Martínez1 CA, Martínez-Antonio A.  Submitted.  Exploring Asymmetric Cell Division in Caulobacter Crescentus Using Logic Modeling.
Enciso J, Mayani H, Mendoza L, Pelayo R.  Submitted.  Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoieticmesenchymal communication networks..
Montagud A, Béal J, Tobalina L, Traynard P, Subramanian V, Szalai B, Alföldi R, Puskás L, Valencia A, Barillot E et al..  Submitted.  Patient-specific Boolean models of signaling networks guide personalized treatments.
2021
Nuñez-Reza KJ, Naldi A, Sánchez-Jiménez A, Leon-Apodaca AV, Santana A, Thomas-Chollier M, Thieffry D, Medina-Rivera A.  2021.  Logical modeling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.
2020
Selvaggio G, Canato S, Pawar A, Monteiro PT, Janody F, Chaouiya C.  2020.  Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research.
Floc’hlay S, Molina MD, Hernandez C, Haillot E, Thomas-Chollier M, Lepage T, Thieffry D.  2020.  Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo. Development.
2018
Letort G, Montagud A, Stoll G, Heiland R, Calzone EBAZL, Macklin P.  2018.  PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. Bioinformatics. 35(7):1188–1196.
2017
Sánchez-Osorio I, Hernández-Martínez CA, Martínez-Antonio A.  2017.  Modeling Asymmetric Cell Division in Caulobacter crescentus Using a Boolean Logic Approach.. Results and problems in cell differentiation. 61:1-21. Abstract
2016
Mbodj A, Gustafson HE, Ciglar L, Junion G, GONZALEZ A, GIRARDOT C, PERRIN L, Furlong EEM, Thieffry D.  2016.  Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. PLoS Comput Biol. 12:1-17. Abstract
Enciso J, Mayani H, Mendoza L, Pelayo R.  2016.  Modeling the pro-inflammatory tumor microenvironment in acute lymphoblastic leukemia predicts a breakdown of hematopoietic-mesenchymal communication networks. Frontiers in Physiology. 7
2015
Cohen DPA, Martignetti L, Robine S, Barillot E, Zinovyev A, Calzone L.  2015.  Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.. PLoS computational biology. 11(11):e1004571. Abstract
Desterke C, Martinaud C, Ruzehaji N, Le Bousse-Kerdilès M-C.  2015.  Inflammation as a Keystone of Bone Marrow Stroma Alterations in Primary Myelofibrosis.. Mediators of inflammation. 2015:415024. Abstract
Abou-Jaoudé W, Monteiro PT, Naldi A, Grandclaudon M, Soumelis V, Chaouiya C, Thieffry D.  2015.  Model checking to assess T-helper cell plasticity. Frontiers in Bioengineering and Biotechnology. 2(86) Abstract
2014
Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse A-M, Garin J, Malissen B, Daëron M, Thieffry D.  2014.  Computational modeling of the main signaling pathways involved in mast cell activation. Current topics in microbiology and immunology. 382:69-93. Abstract
Mombach J, Bugs C, Chaouiya C.  2014.  Modelling the onset of senescence at the G1/S cell cycle checkpoint. BMC Genomics. 15:S7.
2013
Mbodj A, Junion G, Brun C, Furlong EEM, Thieffry D.  2013.  Logical modelling of Drosophila signalling pathways.. Molecular bioSystems. 9(9):2248-58. Abstract
Weinstein N, Mendoza L.  2013.  A network model for the specification of vulval precursor cells and cell fusion control in Caenorhabditis elegans.. Frontiers in genetics. 4:112. Abstract
2012
Tauc HM, Mann T, Werner K, Pandur P.  2012.  A role for Drosophila Wnt-4 in heart development.. Genesis (New York, N.Y. : 2000). 50(6):466-81. Abstract
2011
Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González-Gaitán M.  2011.  Dynamics of Dpp signaling and proliferation control.. Science (New York, N.Y.). 331(6021):1154-9. Abstract
Johnson AN, Mokalled MH, Haden TN, Olson EN.  2011.  JAK/Stat signaling regulates heart precursor diversification in Drosophila. Development. 138(21):4627-4638. Abstract
2009
Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al..  2009.  Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract
2008
Kamiya Y, Miyazono K, Miyazawa K.  2008.  Specificity of the inhibitory effects of Dad on TGF-beta family type I receptors, Thickveins, Saxophone, and Baboon in Drosophila.. FEBS letters. 582(17):2496-500. Abstract
2006
MENDOZA L.  2006.  A network model for the control of the differentiation process in Th cells. Biosystems. 84(2):101-114.
2004
Bischoff V, Vignal C, Boneca IG, Michel T, Hoffmann JA, Royet J.  2004.  Function of the drosophila pattern-recognition receptor PGRP-SD in the detection of Gram-positive bacteria.. Nature immunology. 5(11):1175-80. Abstract
2003
Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M, Beachy PA.  2003.  Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells.. Science (New York, N.Y.). 299(5615):2039-45. Abstract


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