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Journal Article

Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A. 2015. Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.. PLoS computational biology. 11(8):e1004426. Abstract

Zanudo JGT, Steinway SN, Albert R. 2018. Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer. Current Opinion in Systems Biology. 9:1-10.

Fauré A, Vreede BMI, Sucena E, Chaouiya C. 2014. A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects. PLoS Comput Biol. 10(3):e1003527.

Wood W, Faria C, Jacinto A. 2006. Distinct mechanisms regulate hemocyte chemotaxis during development and wound healing in Drosophila melanogaster.. The Journal of cell biology. 173(3):405-16. Abstract

Amanai K, Jiang J. 2001. Distinct roles of Central missing and Dispatched in sending the Hedgehog signal.. Development (Cambridge, England). 128(24):5119-27. Abstract

Naldi A, Carneiro J, Chaouiya C, Thieffry D. 2010. Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Computational Biology. 6(9):e1000912.

Irvine KD, Vogt TF. 1997. Dorsal—ventral signaling in limb development. Current Opinion in Cell Biology. 9(6):867-876.

Queralt E, Lehane C, Novak B, Uhlmann F. 2006. Downregulation of PP2A(Cdc55) phosphatase by separase initiates mitotic exit in budding yeast.. Cell. 125(4):719-32. Abstract

Royet J. 2004. Drosophila melanogaster innate immunity: an emerging role for peptidoglycan recognition proteins in bacteria detection.. Cellular and molecular life sciences : CMLS. 61(5):537-46. Abstract

Vincent S, Wilson R, Coelho C, Affolter M, Leptin M. 1998. The Drosophila protein Dof is specifically required for FGF signaling.. Molecular cell. 2(4):515-25. Abstract

Alcedo J, Ayzenzon M, Von Ohlen T, Noll M, Hooper JE. 1996. The Drosophila smoothened gene encodes a seven-pass membrane protein, a putative receptor for the hedgehog signal.. Cell. 86(2):221-32. Abstract

Valanne S, Wang J-H, Rämet M. 2011. The Drosophila Toll signaling pathway.. Journal of immunology (Baltimore, Md. : 1950). 186(2):649-56. Abstract

Gobert V, Gottar M, Matskevich AA, Rutschmann S, Royet J, Belvin M, Hoffmann JA, Ferrandon D. 2003. Dual activation of the Drosophila toll pathway by two pattern recognition receptors.. Science (New York, N.Y.). 302(5653):2126-30. Abstract

Chen Y, Struhl G. 1996. Dual roles for patched in sequestering and transducing Hedgehog.. Cell. 87(3):553-63. Abstract

Fauré A, Naldi A, Chaouiya C, Thieffry D. 2006. Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.. Bioinformatics (Oxford, England). 22(14):e124-31. Abstract

Gonzalez A, Chaouiya C, Thieffry D. 2006. Dynamical Analysis of the Regulatory Network Defining the Dorsal-Ventral Boundary of the Drosophila Wing Imaginal Disc. Genetics. 174(3):1625-1634.

Thieffry D, Thomas R. 1995. Dynamical behaviour of biological regulatory networks--II. Immunity control in bacteriophage lambda.. Bulletin of mathematical biology. 57(2):277-97. Abstract

Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G. 2020. Dynamical Boolean Modeling of Immunogenic Cell Death.

Naldi A, Remy E, Thieffry D, Chaouiya C. 2011. Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412(21):2207-2218.

Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González-Gaitán M. 2011. Dynamics of Dpp signaling and proliferation control.. Science (New York, N.Y.). 331(6021):1154-9. Abstract

Brunner D, Dücker K, Oellers N, Hafen E, Scholz H, Klämbt C. 1994. The ETS domain protein pointed-P2 is a target of MAP kinase in the sevenless signal transduction pathway.. Nature. 370(6488):386-9. Abstract

Ayers KL, Thérond PP. 2010. Evaluating Smoothened as a G-protein-coupled receptor for Hedgehog signalling.. Trends in cell biology. 20(5):287-98. Abstract

Abou-Jaoudé W, Ouattara DA, Kaufman M. 2009. From structure to dynamics: frequency tuning in the p53-Mdm2 network I. Logical approach.. Journal of theoretical biology. 258(4):561-77. Abstract

Bischoff V, Vignal C, Boneca IG, Michel T, Hoffmann JA, Royet J. 2004. Function of the drosophila pattern-recognition receptor PGRP-SD in the detection of Gram-positive bacteria.. Nature immunology. 5(11):1175-80. Abstract

MENDOZA L, Thieffry D, Alvarez-Buylla ER. 1999. Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics. 15(7):593-606.